8ZW9

RPS4-TIR induced At EDS1-PAD4-ADR1 heterotrimer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.03 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Activation of a helper NLR by plant and bacterial TIR immune signaling.

Yu, H.Xu, W.Chen, S.Wu, X.Rao, W.Liu, X.Xu, X.Chen, J.Nishimura, M.T.Zhang, Y.Wan, L.

(2024) Science : eadr3150-eadr3150

  • DOI: https://doi.org/10.1126/science.adr3150
  • Primary Citation of Related Structures:  
    8ZW9, 8ZWA

  • PubMed Abstract: 

    Plant intracellular nucleotide-binding leucine-rich repeat (NLR) receptors with an N-terminal Toll/interleukin-1 receptor (TIR) domain sense pathogen effectors to initiate immune signaling. TIR domains across different kingdoms possess NADase activities and can produce phosphoribosyl adenosine monophosphate/diphosphate (pRib-AMP/ADP) or cyclic ADPR (cADPR) isomers. Lipase-like proteins, EDS1 and PAD4, transduce immune signals from sensor TIR-NLRs to a helper NLR called ADR1, which executes immune function. We report the structure and function of Arabidopsis EDS1-PAD4-ADR1 (EPA) heterotrimer in complex with pRib-AMP/ADP activated by plant or bacterial TIR signaling. 2'cADPR can be hydrolyzed into pRib-AMP and thus activates EPA signaling. Bacterial TIR domains producing 2'cADPR also activate EPA function. Our findings suggest that 2'cADPR may be the storage form of the unstable signaling molecule pRib-AMP.


  • Organizational Affiliation

    Key Laboratory of Plant Design, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Disease resistance protein ADR1787Arabidopsis thalianaMutation(s): 0 
Gene Names: ADR1At1g33560F10C21.19T1E4.6
UniProt
Find proteins for Q9FW44 (Arabidopsis thaliana)
Explore Q9FW44 
Go to UniProtKB:  Q9FW44
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9FW44
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 1 of Protein EDS1623Arabidopsis thalianaMutation(s): 0 
Gene Names: EDS1EDS1-90EDS1AAt3g48090T17F15.40
UniProt
Find proteins for Q9SU72 (Arabidopsis thaliana)
Explore Q9SU72 
Go to UniProtKB:  Q9SU72
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UniProt GroupQ9SU72
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
PAD4541Arabidopsis thalianaMutation(s): 0 
Gene Names: AXX17_At3g46840AN1_LOCUS15608
UniProt
Find proteins for A0A178V847 (Arabidopsis thaliana)
Explore A0A178V847 
Go to UniProtKB:  A0A178V847
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A178V847
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1D8A (Subject of Investigation/LOI)
Query on A1D8A

Download Ideal Coordinates CCD File 
D [auth B][(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[(2S,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]oxy-3-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphate
C15 H24 N5 O17 P3
GOABUQLPPRUQSR-ZQSHOCFMSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.03 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2024-11-06
    Type: Initial release
  • Version 1.1: 2024-11-27
    Changes: Data collection, Database references